Blog

Our blog about Synapse.org, Portals, and other news from the Sage Bionetworks ecosystem

December 21, 2025  ·  4 minute read

How to Manage Digital Health Data to Accelerate Long Covid Research

A guide to providing high-quality, analysis-ready data to scientists while protecting patients' health information by Thomas Yu, Phil Snyder, Drew Duglan, and Solly Sieberts
  • December 21, 2025  ·  4 minute read

    Piloting the CHIRON Toolkit: Navigating Evaluation

    How will we approach evaluating the CHIRON toolkit? Lessons from other disciplines helps guide us toward meaningful assessment by Shaun Kalweit and Megan Doerr
  • December 21, 2025  ·  9 minute read

    How to Trust Your Digital Twin When it Comes to Improving Your Health

    The challenges and opportunities that come with having a personalized virtual counterpart by Jineta Banerjee, Ann Novakowski, Drew Duglan, and Milen Nikolov
  • December 21, 2025  ·  4 minute read

    De-risking the Underexplored Causes of Alzheimer’s Disease

    Why Creative, Wild Ideas can Help us Solve the Mysteries of Neurodegeneration by Zoë Leanza and Drew Duglan
  • December 21, 2025  ·  4 minute read

    The CHIRON Trustworthiness Calculator: Origin & Rationale

    Introducing the CHIRON Trustworthiness Calculator, a component of the CHIRON Toolkit designed to support researchers' self reflection on their research practice by Jasmine McNealy, Maile Tauali'i, Carly Marten, Astha Kapoor, Joon-Ho Yu, and Megan Doerr
  • December 21, 2025  ·  3 minute read

    How developers can apply AI to work smarter, not harder

    A real-world walkthrough of using AI software assistants to save hours of manual work by Thomas Yu, Drew Duglan, and Brad Macdonald
  • December 21, 2025  ·  2 minute read

    Update on the CHIRON toolkit

    The CHIRON toolkit is built and ready to pilot by Carly Marten and Megan Doerr
  • December 21, 2025  ·  6 minute read

    Group Licenses to Operate

    CHIRON scholars Anouk Ruhaak and Joon-Ho Yu team up to explore social license to operate, proposing a novel pathway to community consent by Anouk Ruhaak, Joon-Ho Yu, and Megan Doerr
  • December 21, 2025  ·  5 minute read

    Community consent: neither a ceiling nor a floor

    CHIRON scholar Jasmine McNealy considers community consent as a requirement for the ethical conduct of biorepository research by Jasmine McNealy and Megan Doerr
  • December 21, 2025  ·  8 minute read

    The Open Science Community Faces Major Barriers to Sharing and Reusing Data. Here’s How We Can Remove Them

    Understand the hurdles faced when managing valuable research assets, as well as some new opportunities that can support data-sharing efforts by Anna Greenwood, Ann Novakowski, Drew Duglan, and Adam Taylor
  • December 21, 2025  ·  7 minute read

    Indicators for engaging communities

    CHIRON scholar Melissa Creary considers the "speed of trust" in biorepository-enabled research: what indicators researchers should use to guide when and how to engage with communities by Melissa Creary and Megan Doerr
  • December 21, 2025  ·  3 minute read

    DCQC - A Universal Data Validation Framework for Bioinformatics Datasets

    Get clarity on the validity of your files in a way that is simple, scalable and lightning fast by Brad Macdonald, Thomas Yu, and Drew Duglan
  • December 21, 2025  ·  7 minute read

    Top Leaders in Health and Technology Just Developed an AI Code of Conduct. Here’s How We Can Build on It

    We evaluate the Code's Principles and Commitments for their clarity, relevance, completeness, conciseness, robustness and adaptability by Ann Novakowski, Megan Doerr, Drew Duglan, and Susheel Varma
  • December 21, 2025  ·  5 minute read

    Community evolution and the validity of consent over time

    CHIRON scholar Anouk Ruhaak discusses what prompts communities to evolve and how change could impact the validity of a community's consent over time by Anouk Ruhaak and Megan Doerr
  • December 21, 2025  ·  5 minute read

    In what situations is it necessary to invoke consent of a predefined community?

    CHIRON scholar Joon-Ho Yu explores how researchers might identify when they need to invoke the consent of a community, even in the context of biorepository-enabeled research by Joon-Ho Yu and Megan Doerr
  • December 21, 2025  ·  4 minute read

    Roles and Responsibilities of Researchers and Communities in Research

    CHIRON scholar Maile Tauali’i guides us on the why and the how of building researchers’ capacity to limit group harm, the role of research institutions and regulatory bodies, and community power in biorepository contexts by Maile Tauali'i and Megan Doerr
  • December 21, 2025  ·  4 minute read

    We’ve Taken a Leap Forward with our Synapse Python Client. Here’s What Users can Expect

    What the latest client updates mean for the performance and sustainability of your data management by Bryan Fauble, Drew Duglan, and Thomas Yu
  • December 21, 2025  ·  12 minute read

    On the Meaning of Community Consent in a Biorepository Context

    CHIRON scholars Astha Kapoor & Sam Moore explore the contours of what constitutes community in a biorepository context, how we might ensure representativeness, and what governance limits, if any, should be considered given the indefinite lifespan of these resources by Astha Kapoor, Samuel Moore, and Megan Doerr
  • December 21, 2025  ·  4 minute read

    Engaging Academics and Communities to Develop the CHIRON Toolkit

    How we have engaged academic and community experts as leaders in Community Health Interests for Researchers & Oversight Networks (CHIRON) by Carly Marten, Samuel Moore, and Megan Doerr
  • December 21, 2025  ·  2 minute read

    Introducing CHIRON: Community Health Interests for Researchers and Oversight Networks

    Developing and piloting a novel toolkit for researchers, ethics boards, and data access committees to consider group interests in biorepository research by Megan Doerr
  • December 21, 2025  ·  2 minute read

    We Experimented with a Data Warehousing Tool to Help with Global Dataset Access. Here’s What Happened

    Our Experiences with Cloud Computing Platforms to Aid Data Operations by Thomas Yu and Drew Duglan
  • December 21, 2025  ·  3 minute read

    What is "ELSI" research, and how should you apply it for a more ethical approach to innovation?

    Join us as we work to design, build, and refine representative, fair, and inclusive data governance practices by Megan Doerr
  • December 18, 2025  ·  10 minute read

    The NIH just released the Draft 2023-2028 Strategic Plan for Data Science. Here are the Benefits, Gaps and Opportunities

    The NIH is soliciting feedback from the biomedical community. Here's what we think by Robert Allaway, Adam Taylor, Anna Greenwood, Jineta Banerjee, Solveig Sieberts, Jake Albrecht, Luca Foschini, and Susheel Varma
  • December 18, 2025  ·  6 minute read

    Debugging on AWS Cloud: How to solve the dreaded "504 gateway timeout"

    A scientific approach to troubleshooting 504 gateway timeout errors for schematic APIs by Lingling Peng
  • December 18, 2025  ·  6 minute read

    Best Practices for Research Software in Open Science

    Sage Bionetworks' take on best practices for developing re-usable research software in open science by Thomas Yu, Drew Duglan, Robert Allaway, Jineta Banerjee, Brad Macdonald, Bryan Fauble, Nick Grosenbacher, Jenny Medina, Thomas Schaffter, Jessica Britton, Sarah Chan, Milen Nikolov, Adam Taylor, and Sonia Carlson
  • December 18, 2025  ·  4 minute read

    Lessons from participating in the Schwannomatosis Open Research Collaborative

    Forays into open science by Hui Xin Ng
  • December 18, 2025  ·  2 minute read

    A new diagnostic framework to mitigate the ethical risks of health datasets

    A guide for databank builders, funders, governments, researchers, and communities by Megan Doerr and Astha Kapoor
  • December 18, 2025  ·  11 minute read

    Extracting insights from scientific publications using large language models

    A case study in using ChatGPT to extract rare disease data from the literature by Robert Allaway, Christina Conrad, Sasha Scott, Ann Novakowski, Jineta Banerjee, and Julie Bletz
  • Synapse.org

    Check out what we're working on

    MCP server

    Our collaboration with Anthropic

    Bioarena.io

    Benchmarking LLMS for Biomedicine